Journal: mBio

Article Title: Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case

doi: 10.1128/mBio.02136-14

Figure Lengend Snippet: General features of the Aeromonas genomes

Article Snippet: A. veronii bv. sobria , AER 39 , 4.42 , 4 , 283 , 1,516,045 , 58.9 , 3,948 , AGWT01 , The Broad Institute.

Techniques:

Journal: mBio

Article Title: Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case

doi: 10.1128/mBio.02136-14

Figure Lengend Snippet: (A) Maximum likelihood reconstruction of 16 single-copy housekeeping genes. Support values are represented by dots: red (90%+ bootstraps), orange (80%+), yellow (70%+). (B) Approximate maximum likelihood reconstruction of 2,710 orthologous groups found in 90% or more of the taxa. aLRT SH-like support values equal to or greater than 0.97 are represented by red dots. The species A . veronii , A . hydrophila , A . dhakensis , A . salmonicida , and A . caviae are color-coded in both trees. Additionally, two previously misidentified taxa, A . veronii AMC 34 and A . hydrophila AH4, are shown in red and teal, respectively. Eight well-supported clades were shared between the two reconstructions. They are shown by the colored bars and are numbered 1 through 8.

Article Snippet: A. veronii bv. sobria , AER 39 , 4.42 , 4 , 283 , 1,516,045 , 58.9 , 3,948 , AGWT01 , The Broad Institute.

Techniques:

Journal: Pathogens

Article Title: Use of Matrix-Assisted and Laser Desorption/Ionization Time-of-Flight Technology in the Identification of Aeromonas Strains Isolated from Retail Sushi and Sashimi

doi: 10.3390/pathogens13060432

Figure Lengend Snippet: List of the certified Aeromonas strains used in the present study to implement SARAMIS software version V4.12.

Article Snippet: A. sobria , NCIMB 75 , Diseased freshwater fish.

Techniques: Software, Infection

Journal: Pathogens

Article Title: Use of Matrix-Assisted and Laser Desorption/Ionization Time-of-Flight Technology in the Identification of Aeromonas Strains Isolated from Retail Sushi and Sashimi

doi: 10.3390/pathogens13060432

Figure Lengend Snippet: Reference Spectra and Super Spectra list of Aeromonas species included in SARAMIS Database V4.12.

Article Snippet: A. sobria , NCIMB 75 , Diseased freshwater fish.

Techniques:

Journal: Pathogens

Article Title: Use of Matrix-Assisted and Laser Desorption/Ionization Time-of-Flight Technology in the Identification of Aeromonas Strains Isolated from Retail Sushi and Sashimi

doi: 10.3390/pathogens13060432

Figure Lengend Snippet: Identification results of different Aeromonas strains processed using MALDI-TOF technology with identification software SARAMIS, version 4.12.

Article Snippet: A. sobria , NCIMB 75 , Diseased freshwater fish.

Techniques: Software

Journal: Pathogens

Article Title: Use of Matrix-Assisted and Laser Desorption/Ionization Time-of-Flight Technology in the Identification of Aeromonas Strains Isolated from Retail Sushi and Sashimi

doi: 10.3390/pathogens13060432

Figure Lengend Snippet: Comparison between the identification of different Aeromonas strains using SARAMIS software V 4.12 and an implemented version of the software (V4.12 plus ) proposed in the present study. The best percentages of strain identifications performed with both versions of the software are reported regardless of the type of growth medium used.

Article Snippet: A. sobria , NCIMB 75 , Diseased freshwater fish.

Techniques: Comparison, Software